A letter was sent to Geelani late on Wednesday night informing him about his 'replacement' and directions to vacate his residence, Amir-e-Jamaat Nazir Ahmed Kashiani told PTI.
Shops, business and educational institutions in the Kashmir valley remained closed, official sources said.
A joint contingent of police and paramilitary forces laid a cordon around Geelani's Hyderpora house early in the morning.
"It will take time," Sayeed told media persons.
The CCS also discussed the Nuclear Confidence Building Measures with Pakistan.
While shops and business establishments remained closed for the ninth day as traders are on an indefinite strike against the implementation of value added tax, all modes of transport went off the roads on Thursday, the sources said.
J&K CM Mufti Mohammad Sayeed has issued directions to the state home department to step up investigations and provide secure environment to all civilians.
It said the BJP could cause trouble for the country by tying up with PDP.
Nepal has said it would not allow anyone to use its soil to indulge in activities that cause material harm to India.
Breaking her silence on the series of allegations levelled by her former ally, the BJP, Mehbooba said it was sad to see the saffron party disown its own initiative and label it a "soft approach".
"There is [a] strong difference of opinion with Geelani. If he cooperates and removes this difference it would be fine. Otherwise, he will slowly be isolated."
Chief Minister Mufti Mohammed Sayeed said the release of the detainees had nothing to do with the talks between the All Parties Hurriyat Conference and Deputy Prime Minister Lal Kishenchand Advani on Thursday in New Delhi.
'The biggest stumbling block will come from the traditionalists in the Pakistan army who have grown on a diet of anti-Indian propaganda and thinking on which much of their role -- both militarily and politically -- is centered upon.'
Holding Pakistan responsible for the violence in the valley, the J-K CM said hat if Islamabad is really concerned then it will try to help in fixing the crisis rather than fanning the flames.
If granted permission, he would be travelling by the June 15 bus along with the visiting Kashmiri separatist leaders, who are scheduled to return the same day after their visit to Pakistan.